Restore or Update renv Lockfile Packages — projr_renv_restore • projr

Functions to manage the restoration and updating of packages specified in the renv lockfile.

projr_renv_restore(): Restores packages from the lockfile, attempting to install the lockfile versions.
projr_renv_update(): Updates packages to their latest available versions, ignoring the lockfile versions.
projr_renv_restore_and_update(): First restores packages from the lockfile, then updates them to the latest versions.

Usage

projr_renv_restore(
  github = TRUE,
  non_github = TRUE,
  biocmanager_install = FALSE
)

projr_renv_update(
  github = TRUE,
  non_github = TRUE,
  biocmanager_install = FALSE
)

projr_renv_restore_and_update(
  github = TRUE,
  non_github = TRUE,
  biocmanager_install = FALSE
)

Arguments

github: Logical. Whether to process GitHub packages. Default is TRUE.
non_github: Logical. Whether to process non-GitHub packages (CRAN and Bioconductor). Default is TRUE.
biocmanager_install: Logical. If TRUE, Bioconductor packages will be installed using BiocManager::install; otherwise, renv::install("bioc::<package_name>") will be used. Default is FALSE.

Value

Invisibly returns TRUE upon successful completion.

Details

Control whether to process GitHub packages, non-GitHub packages (CRAN and Bioconductor), or both using the github and non_github arguments.

Examples

if (FALSE) { # \dontrun{
# Restore all packages
projr_renv_restore()

# Update all packages
projr_renv_update()

# Restore and then update all packages
projr_renv_restore_and_update()

# Only restore non-GitHub packages
projr_renv_restore(github = FALSE)

# Only update GitHub packages
projr_renv_update(non_github = FALSE)
} # }